Ola has a set of stored procedures to do maint operations, see http://ola.hallengren.com/. Ola has now updated them to support exclusions or inclusions of tables, indexes or even whole schemas from index rebuild/reorg. Check out http://ola.hallengren.com/Documentation.html#SelectingIndexes for info on how to define exclusions and http://ola.hallengren.com/Versions.html for version overview.
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